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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_32707938_32711467_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
32707938 - 32711467
Intron Length:
3530

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTATG
5'SS Class:
strong_major
3'SS Sequence:
CCCCTCTGTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTGTTAC
U12 Branch Point Sequence:
TTTTTCTCCCTT
Flanking Amino Acid:
FAVSLDGFVCDDFPKPQITV
Intron Amino Acid Position:
421

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
0.8
79.6
35.4
Major BPS
53.7
0.09
1.4
49.1
46
Major PPT
72.9
0.52
0.9
67.7
32.3
Minor 5ss
34
-1.8
2.8
39.3
40.3
Minor BPS
40.3
-0.6
3.6
75.15
42.4

Associated Gene:

Gene:
LRIG3
Ensembl Gene ID:
ENSAPLG00000008222
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040710
32700637 - 32744562
43926
ENSAPLT00000025094
32700637 - 32743332
42696
ENSAPLT00000008581
32700637 - 32739116
38480