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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_32711632_32713951_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
32711632 - 32713951
Intron Length:
2320

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTAAGTTTC
5'SS Class:
major
3'SS Sequence:
TGCTTTTTCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTAAT
U12 Branch Point Sequence:
CTGTCTTTGAAT
Flanking Amino Acid:
AFSQMKKLKELHLNTSSLLC
Intron Amino Acid Position:
366

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
77
32.4
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
80.7
0.69
0.7
80.4
31.6
Minor 5ss
47.3
-0.3
2.8
67.6
37.4
Minor BPS
64.2
0.53
1.5
75.57
41.7

Associated Gene:

Gene:
LRIG3
Ensembl Gene ID:
ENSAPLG00000008222
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025094
32700637 - 32743332
42696
ENSAPLT00000008581
32700637 - 32739116
38480
ENSAPLT00000040710
32700637 - 32744562
43926