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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_32714482_32715160_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
32714482 - 32715160
Intron Length:
679

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTGAGTACT
5'SS Class:
major
3'SS Sequence:
TAATATTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
ATATTCTTAATA
Flanking Amino Acid:
AFSGLDKLTKLILQGNRIRS
Intron Amino Acid Position:
318

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1.1
73.9
36.3
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
80.6
0.69
0.9
77.6
40.8
Minor 5ss
35.8
-1.6
2.9
53.8
42.8
Minor BPS
77.2
0.85
1
78.28
31.7

Associated Gene:

Gene:
LRIG3
Ensembl Gene ID:
ENSAPLG00000008222
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040710
32700637 - 32744562
43926
ENSAPLT00000025094
32700637 - 32743332
42696
ENSAPLT00000008581
32700637 - 32739116
38480