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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_32735700_32739102_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
32735700 - 32739102
Intron Length:
3403

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAGGTGCT
5'SS Class:
major
3'SS Sequence:
TGTAACCTCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
ATTTTTGTAACC
Flanking Amino Acid:
MYFLKDLSHNKLSS
Intron Amino Acid Position:
5

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1
72.8
35.1
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
65.6
0.35
0.9
58.2
38.1
Minor 5ss
35.6
-1.6
3.5
49.9
40.8
Minor BPS
61.5
0.34
2
75.75
34.8

Associated Gene:

Gene:
LRIG3
Ensembl Gene ID:
ENSAPLG00000008222
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008581
32700637 - 32739116
38480