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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_32735700_32743144_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
32735700 - 32743144
Intron Length:
7445

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTGAGTATG
5'SS Class:
major
3'SS Sequence:
TGTAACCTCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
ATTTTTGTAACC
Flanking Amino Acid:
PERLPRGAVQLDLSHNKLSS
Intron Amino Acid Position:
63

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.1
71.2
40.3
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
65.6
0.35
0.9
58.2
38.1
Minor 5ss
36.8
-1.5
2.9
52.3
44.3
Minor BPS
61.5
0.34
2
75.75
34.8

Associated Gene:

Gene:
LRIG3
Ensembl Gene ID:
ENSAPLG00000008222
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025094
32700637 - 32743332
42696