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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_32774875_32774980_F

Intron Information:

Intron Rank:
129736
Intron Class:
major
Intron Phase:
Intron Coordinates:
32774875 - 32774980
Intron Length:
106

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
GCTTCCCCTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCAAAA
U12 Branch Point Sequence:
TTTTGGGTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
93.7
19.8
Major BPS
55.5
0.14
1
61.5
32.5
Major PPT
77
0.61
0.8
69.3
31.5
Minor 5ss
43.4
-0.7
2.9
60.8
37.6
Minor BPS
46.3
-0.2
2.8
79.08
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019823
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025320
32774606 - 32789393
14788