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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_32775451_32787361_F

Intron Information:

Intron Rank:
129738
Intron Class:
major
Intron Phase:
Intron Coordinates:
32775451 - 32787361
Intron Length:
11911

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTCAGTGAG
5'SS Class:
major
3'SS Sequence:
TTATGTTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
TTGATATTGATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.7
0.46
1.3
66
40.1
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
80.8
0.69
0.9
73.7
41.5
Minor 5ss
29.2
-2.4
3
32.3
35.9
Minor BPS
50.4
0.01
1.6
63.34
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019823
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035331
32774606 - 32789393
14788
ENSAPLT00000025320
32774606 - 32789393
14788