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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_32787425_32789145_F

Intron Information:

Intron Rank:
129739
Intron Class:
major
Intron Phase:
Intron Coordinates:
32787425 - 32789145
Intron Length:
1721

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTCTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
GGTTTCTTAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
1.2
81.4
32.7
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
91
0.92
0.6
85.6
29.2
Minor 5ss
31.4
-2.1
2.5
36.7
40.4
Minor BPS
75.8
0.81
1.1
76.57
34.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019823
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035331
32774606 - 32789393
14788
ENSAPLT00000025320
32774606 - 32789393
14788