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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_32807292_32812139_R

Intron Information:

Intron Rank:
136527
Intron Class:
major
Intron Phase:
Intron Coordinates:
32807292 - 32812139
Intron Length:
4848

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTCAT
U12 Branch Point Sequence:
TTTTTTTTTTCA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
85.3
25.4
Major BPS
74.8
0.62
0.9
75.3
29.7
Major PPT
100
1.12
0.4
100
0
Minor 5ss
37.5
-1.4
2.8
46.9
41.8
Minor BPS
44.4
-0.4
3.5
74.12
37.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020893
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033797
32807032 - 32816809
9778