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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_32812223_32816465_R

Intron Information:

Intron Rank:
136528
Intron Class:
major
Intron Phase:
Intron Coordinates:
32812223 - 32816465
Intron Length:
4243

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTGTAA
5'SS Class:
major
3'SS Sequence:
TGCATAATTCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TTTTGCATAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.8
0.49
1.1
64.9
37.3
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
69.7
0.44
1
59.3
45.1
Minor 5ss
35
-1.7
3.4
46.8
48.5
Minor BPS
65.3
0.56
2
88.85
36.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020893
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033797
32807032 - 32816809
9778