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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_32822536_32827449_R

Intron Information:

Intron Rank:
135574
Intron Class:
major
Intron Phase:
Intron Coordinates:
32822536 - 32827449
Intron Length:
4914

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTCTC
5'SS Class:
strong_major
3'SS Sequence:
CTTTCCACTAAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
AACTTCTCAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.9
77.9
36.8
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
69
0.43
1
68.4
30.8
Minor 5ss
38.9
-1.2
3
50.6
40.1
Minor BPS
60.3
0.4
1.5
71.35
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020361
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045252
32822059 - 32827976
5918