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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_328856_329174_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
328856 - 329174
Intron Length:
319

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAGGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TCTCCTCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
TTTTATAAACCC
Flanking Amino Acid:
DLVLKLREKLVRARCQHLPV
Intron Amino Acid Position:
535

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
80.5
34.9
Major BPS
78.6
0.71
1
78.6
31
Major PPT
82.8
0.74
0.7
77.1
24.8
Minor 5ss
44.9
-0.5
3.2
63.2
43.8
Minor BPS
43.7
-0.5
2.2
63.79
41.9

Associated Gene:

Gene:
DENND6B
Ensembl Gene ID:
ENSAPLG00000009711
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010142
328733 - 348761
20029