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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_32901811_32902385_R

Intron Information:

Intron Rank:
155337
Intron Class:
major
Intron Phase:
Intron Coordinates:
32901811 - 32902385
Intron Length:
575

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAATACCA
5'SS Class:
major
3'SS Sequence:
TATTTTTTCCAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TTTTATTTAGTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
67.2
38
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
75.8
0.58
1
75.4
38.3
Minor 5ss
32.3
-2
3
40.9
44.8
Minor BPS
64.8
0.54
1.7
84.75
36.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031067
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020726
32901772 - 32905064
3293