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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_32902521_32904885_R

Intron Information:

Intron Rank:
155338
Intron Class:
major
Intron Phase:
Intron Coordinates:
32902521 - 32904885
Intron Length:
2365

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACATCC
5'SS Class:
major
3'SS Sequence:
ATTTTGTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1.1
69.5
36.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
87.6
0.84
0.8
85.1
34.9
Minor 5ss
44.7
-0.6
2.8
60.7
43.8
Minor BPS
59.9
0.39
1.7
79.07
37.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031067
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020726
32901772 - 32905064
3293