About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_330213_332595_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
330213 - 332595
Intron Length:
2383

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAGTT
5'SS Class:
strong_major
3'SS Sequence:
TCCCTTTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
CTCTTCTCAATG
Flanking Amino Acid:
VLKGDWLGLYRRFFKSPNFD
Intron Amino Acid Position:
475

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.5
1.02
0.7
88
25.3
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
84.5
0.78
0.7
79.9
25.5
Minor 5ss
36.4
-1.5
3.6
55.7
48.5
Minor BPS
56
0.05
1.7
58.48
44.1

Associated Gene:

Gene:
DENND6B
Ensembl Gene ID:
ENSAPLG00000009711
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010142
328733 - 348761
20029