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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_33037571_33041801_F

Intron Information:

Intron Rank:
139293
Intron Class:
major
Intron Phase:
Intron Coordinates:
33037571 - 33041801
Intron Length:
4231

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATAATT
5'SS Class:
strong_major
3'SS Sequence:
TATTATTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTATTATTA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.9
86.5
28.6
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
87.5
0.84
0.8
85.1
34.8
Minor 5ss
39.5
-1.2
3.1
58.2
46
Minor BPS
59.9
0.31
1.8
75.92
35.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024998
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019057
33036773 - 33044287
7515