About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_33042487_33043959_F

Intron Information:

Intron Rank:
139295
Intron Class:
major
Intron Phase:
Intron Coordinates:
33042487 - 33043959
Intron Length:
1473

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGACCA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTCTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCTT
U12 Branch Point Sequence:
TTTTTTTTCTCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.4
0.93
0.8
74.4
36
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
85.5
0.8
0.6
81.7
23.2
Minor 5ss
32.2
-2
3
40.3
45.3
Minor BPS
45.5
-0.2
3.6
82.72
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024998
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019057
33036773 - 33044287
7515