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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_33046499_33047993_F

Intron Information:

Intron Rank:
139298
Intron Class:
major
Intron Phase:
Intron Coordinates:
33046499 - 33047993
Intron Length:
1495

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTATGTCTC
5'SS Class:
major
3'SS Sequence:
TACTCCCATACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAC
U12 Branch Point Sequence:
AATATTTTACTC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
70.6
39.7
Major BPS
77.8
0.69
0.9
69.4
37.3
Major PPT
72.6
0.51
0.9
65.9
34.7
Minor 5ss
45
-0.5
2.8
58.6
40.4
Minor BPS
49.4
-0
1.5
57.76
35.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024998
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044063
33046131 - 33048763
2633