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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_33126514_33128073_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
33126514 - 33128073
Intron Length:
1560

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGTG
5'SS Class:
strong_major
3'SS Sequence:
ATGTGTTGTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TTTGTTTTATGT
Flanking Amino Acid:
ELYLCIGVVGGLGLAFNLQP
Intron Amino Acid Position:
120

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
78.9
35.3
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
68.3
0.41
1
66.3
44.6
Minor 5ss
34
-1.8
3.5
46.6
48.7
Minor BPS
50.6
0.1
2
74.38
43.4

Associated Gene:

Gene:
SLC16A7
Ensembl Gene ID:
ENSAPLG00000004444
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004559
33103465 - 33132407
28943