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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_33128887_33131480_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
33128887 - 33131480
Intron Length:
2594

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTATTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TGTTTTTCTATT
Flanking Amino Acid:
CPVLIGPPLGGWLVDVTGEY
Intron Amino Acid Position:
391

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95
1.06
0.7
93.7
19.9
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
89.3
0.88
0.7
81.9
34.4
Minor 5ss
39.4
-1.2
3.1
57.6
46.6
Minor BPS
49.7
0.06
1.8
71.98
39.2

Associated Gene:

Gene:
SLC16A7
Ensembl Gene ID:
ENSAPLG00000004444
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004559
33103465 - 33132407
28943