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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_3329148_3331248_F

Intron Information:

Intron Rank:
149463
Intron Class:
major
Intron Phase:
Intron Coordinates:
3329148 - 3331248
Intron Length:
2101

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
GTATGTGTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAA
U12 Branch Point Sequence:
AAATGCCTAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.9
77.9
36.8
Major BPS
70.8
0.52
1
70.6
31.6
Major PPT
67.5
0.39
1
58.3
47.1
Minor 5ss
36.4
-1.5
3.3
46.1
43.6
Minor BPS
48.5
-0.1
2
60.84
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030422
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020189
3328955 - 3337967
9013