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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_33563518_33565701_R

Intron Information:

Intron Rank:
154741
Intron Class:
major
Intron Phase:
Intron Coordinates:
33563518 - 33565701
Intron Length:
2184

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
ATTATTATTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTATTATTA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
1
82.7
29.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
80.8
0.69
0.9
74.7
39.2
Minor 5ss
38.4
-1.3
2.7
48.5
40.3
Minor BPS
59.9
0.31
1.8
75.92
35.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030825
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047305
33563348 - 33676625
113278