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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_335984_336085_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
335984 - 336085
Intron Length:
102

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCC|GTAAGTAGC
5'SS Class:
major
3'SS Sequence:
CCTTTCTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTGCAC
U12 Branch Point Sequence:
TTGTTCTGCACT
Flanking Amino Acid:
FKEYTTRTQAPPNIVVGVTN
Intron Amino Acid Position:
315

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.8
0.47
1.3
67.4
44
Major BPS
52.5
0.06
1.4
65.3
41.6
Major PPT
83.7
0.76
0.7
76.7
32
Minor 5ss
37.9
-1.4
2.7
50.5
39.2
Minor BPS
58.2
0.34
1.9
80.19
41.9

Associated Gene:

Gene:
DENND6B
Ensembl Gene ID:
ENSAPLG00000009711
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010142
328733 - 348761
20029