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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_33607141_33676544_R

Intron Information:

Intron Rank:
154738
Intron Class:
major
Intron Phase:
Intron Coordinates:
33607141 - 33676544
Intron Length:
69404

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGGATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCCCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAA
U12 Branch Point Sequence:
AGGTCTTAAAAC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
84.2
33.4
Major BPS
77.8
0.69
1
78.2
31.8
Major PPT
88.1
0.86
0.6
81.6
30.5
Minor 5ss
44.3
-0.6
3.2
65.5
45.8
Minor BPS
49.9
-0
1.8
58.51
40.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030825
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047305
33563348 - 33676625
113278
ENSAPLT00000028442
33603099 - 33676625
73527
ENSAPLT00000023884
33546020 - 33676625
130606