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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_33689218_33690762_R

Intron Information:

Intron Rank:
138869
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
33689218 - 33690762
Intron Length:
1545

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTGCA
5'SS Class:
strong_major
3'SS Sequence:
TCCCTTGAGGAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
77
31.5
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
52.2
0.05
1.2
55.5
38.3
Minor 5ss
33
-1.9
3.1
42.1
44.5
Minor BPS
59.9
0.39
1.7
79.07
37.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022204
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037766
33684013 - 33691085
7073