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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_33705917_33709756_R

Intron Information:

Intron Rank:
129116
Intron Class:
major
Intron Phase:
Intron Coordinates:
33705917 - 33709756
Intron Length:
3840

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTCTGTATT
5'SS Class:
major
3'SS Sequence:
TGTTTCTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
TATTTTGTAATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1.3
83.5
35.1
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
84.7
0.78
0.8
77.7
36.7
Minor 5ss
43.2
-0.7
2.6
60.2
44.3
Minor BPS
53.1
-0
2
63.33
39.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016662
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042321
33705025 - 33712441
7417
ENSAPLT00000031673
33705025 - 33710240
5216