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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_338063_338302_R

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
338063 - 338302
Intron Length:
240

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTGTT
5'SS Class:
strong_major
3'SS Sequence:
AACTGTAATCTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
CTGTTCTTAACT
Flanking Amino Acid:
NLPVMGVVIQVRIPSRVDKP
Intron Amino Acid Position:
203

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
87
27.8
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
58.3
0.19
1
48.8
43.3
Minor 5ss
44.7
-0.6
3.2
66.4
45.1
Minor BPS
80.5
1.03
1.2
87.1
39

Associated Gene:

Gene:
DENND6B
Ensembl Gene ID:
ENSAPLG00000009711
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010142
328733 - 348761
20029