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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_33843106_33854789_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33843106 - 33854789
Intron Length:
11684

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAGGTATG
5'SS Class:
major
3'SS Sequence:
TATATTCCCTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TGTTTTTTAGTT
Flanking Amino Acid:
SSGNKVKTTRLWQYSWSQI*
Intron Amino Acid Position:
196

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1.1
72.7
44.5
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
77
0.61
0.9
74.3
36.1
Minor 5ss
37.5
-1.4
3.1
42.2
44.7
Minor BPS
65
0.55
1.5
79.88
36.7

Associated Gene:

Gene:
TAFA2
Ensembl Gene ID:
ENSAPLG00000002705
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002726
33843076 - 33890447
47372