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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_33888161_33889507_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
33888161 - 33889507
Intron Length:
1347

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAGTTT
5'SS Class:
major
3'SS Sequence:
TTTTTGTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTTAT
U12 Branch Point Sequence:
AAATACTTATTT
Flanking Amino Acid:
NKIVSISWRARMNKRYLQKA
Intron Amino Acid Position:
67

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1.1
73
38.7
Major BPS
83.6
0.84
0.8
71.9
35.8
Major PPT
92.6
0.96
0.7
88.3
28.9
Minor 5ss
40.9
-1
3.7
64.2
47.3
Minor BPS
54.3
0.21
1.8
69.87
40.7

Associated Gene:

Gene:
TAFA2
Ensembl Gene ID:
ENSAPLG00000002705
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002726
33843076 - 33890447
47372