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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_33889634_33890373_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
33889634 - 33890373
Intron Length:
740

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTTGTATC
5'SS Class:
major
3'SS Sequence:
GCTCTGATTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAT
U12 Branch Point Sequence:
TTTGCTCTGATT
Flanking Amino Acid:
FPVGVLGSGERFKGVWNAPQ
Intron Amino Acid Position:
25

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1.1
79.1
34.5
Major BPS
79
0.72
1
69
38.9
Major PPT
74.1
0.54
1
69.6
40.4
Minor 5ss
42.7
-0.8
2.5
54.7
42.5
Minor BPS
57
0.3
1.8
79.25
37.5

Associated Gene:

Gene:
TAFA2
Ensembl Gene ID:
ENSAPLG00000002705
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002726
33843076 - 33890447
47372