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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_34056951_34062103_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
34056951 - 34062103
Intron Length:
5153

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACTGAT
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTCTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TTTCTCTTACAG
Flanking Amino Acid:
GPIDNSGLLKDGDSQSLKEH
Intron Amino Acid Position:
53

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
1.1
81.4
32.7
Major BPS
83
0.82
0.8
82
24.9
Major PPT
89.3
0.88
0.6
83.8
24.5
Minor 5ss
39.9
-1.1
3.3
57.8
46.8
Minor BPS
55.6
0.04
1.8
65.72
41.9

Associated Gene:

Gene:
USP15
Ensembl Gene ID:
ENSAPLG00000001801
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002389
34056794 - 34110967
54174
ENSAPLT00000045791
34056794 - 34083495
26702
ENSAPLT00000041372
34056794 - 34110967
54174
ENSAPLT00000017691
34056794 - 34110967
54174