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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_34061821_34062103_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
34061821 - 34062103
Intron Length:
283

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGGAAA
5'SS Class:
major
3'SS Sequence:
CTTTCTCTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TTTCTCTTACAG
Flanking Amino Acid:
MYKDGDSQSLKEH
Intron Amino Acid Position:
4

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1
70.9
36.4
Major BPS
83
0.82
0.8
82
24.9
Major PPT
89.3
0.88
0.6
83.8
24.5
Minor 5ss
24.7
-2.9
3.1
29.4
43.5
Minor BPS
55.6
0.04
1.8
65.72
41.9

Associated Gene:

Gene:
USP15
Ensembl Gene ID:
ENSAPLG00000001801
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029192
34061811 - 34110967
49157