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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_34062235_34064980_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34062235 - 34064980
Intron Length:
2746

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTCTTA
5'SS Class:
major
3'SS Sequence:
ATCTGTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TTCATGTTAATC
Flanking Amino Acid:
MEGQEPIARKVVEQGMFVKH
Intron Amino Acid Position:
97

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.5
0.51
1.1
68
39.7
Major BPS
84.4
0.85
1
84
34.5
Major PPT
83.5
0.75
0.8
80.7
36.3
Minor 5ss
46.4
-0.4
3.1
65
46.2
Minor BPS
52.2
0.05
2.1
65.99
40.4

Associated Gene:

Gene:
USP15
Ensembl Gene ID:
ENSAPLG00000001801
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041372
34056794 - 34110967
54174
ENSAPLT00000029192
34061811 - 34110967
49157
ENSAPLT00000017691
34056794 - 34110967
54174
ENSAPLT00000002389
34056794 - 34110967
54174
ENSAPLT00000045791
34056794 - 34083495
26702