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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_34065108_34069646_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
34065108 - 34069646
Intron Length:
4539

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGGGAA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCAAAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
CTTTTCAAAACA
Flanking Amino Acid:
TRRFSKADTIDTIEKEIRKI
Intron Amino Acid Position:
139

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
71
34.5
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
71.4
0.48
1
67.4
36.9
Minor 5ss
34.6
-1.7
3.5
45.7
49.5
Minor BPS
54.6
0.14
2
71.45
40.9

Associated Gene:

Gene:
USP15
Ensembl Gene ID:
ENSAPLG00000001801
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029192
34061811 - 34110967
49157
ENSAPLT00000017691
34056794 - 34110967
54174
ENSAPLT00000002389
34056794 - 34110967
54174
ENSAPLT00000045791
34056794 - 34083495
26702
ENSAPLT00000041372
34056794 - 34110967
54174