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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_34082677_34083464_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
34082677 - 34083464
Intron Length:
788

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGCAAA
5'SS Class:
strong_major
3'SS Sequence:
TTCACTTTAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAC
U12 Branch Point Sequence:
TTCACTTTAACA
Flanking Amino Acid:
SNNYNNMNNRKYLIEHLSNT
Intron Amino Acid Position:
236

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
77
33.6
Major BPS
81.3
0.78
0.8
83.4
26.1
Major PPT
77
0.61
0.9
72.9
36
Minor 5ss
40.4
-1.1
2.9
48.9
41.5
Minor BPS
76.5
0.83
1.2
79.82
36.4

Associated Gene:

Gene:
USP15
Ensembl Gene ID:
ENSAPLG00000001801
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045791
34056794 - 34083495
26702