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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_34082677_34091509_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
34082677 - 34091509
Intron Length:
8833

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGCAAA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ACATTTTTAAAA
Flanking Amino Acid:
SNNYNNMNNRNVKNSNYCLP
Intron Amino Acid Position:
236

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
77
33.6
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
92.3
0.95
0.7
87.5
30
Minor 5ss
40.4
-1.1
2.9
48.9
41.5
Minor BPS
60.4
0.32
1.3
63.16
37

Associated Gene:

Gene:
USP15
Ensembl Gene ID:
ENSAPLG00000001801
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029192
34061811 - 34110967
49157
ENSAPLT00000017691
34056794 - 34110967
54174
ENSAPLT00000002389
34056794 - 34110967
54174