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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_34091655_34101051_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34091655 - 34101051
Intron Length:
9397

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTACT
5'SS Class:
strong_major
3'SS Sequence:
CTTCTATTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TCATTCTAAAGA
Flanking Amino Acid:
NTCFMNSAIQCLSNTPPLTE
Intron Amino Acid Position:
285

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.9
0.94
0.8
86.2
29.3
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
86
0.81
0.8
80
30.8
Minor 5ss
44.5
-0.6
2.5
60.9
43.5
Minor BPS
50.9
0.02
2
63.03
43.6

Associated Gene:

Gene:
USP15
Ensembl Gene ID:
ENSAPLG00000001801
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002389
34056794 - 34110967
54174
ENSAPLT00000041372
34056794 - 34110967
54174
ENSAPLT00000029192
34061811 - 34110967
49157
ENSAPLT00000017691
34056794 - 34110967
54174