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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_34101226_34101570_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34101226 - 34101570
Intron Length:
345

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGTATG
5'SS Class:
strong_major
3'SS Sequence:
GTTTTCTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
GATGCTAGAAGT
Flanking Amino Acid:
YSYVTPRAFKTQVGRFAPQF
Intron Amino Acid Position:
343

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
1.1
83
36.1
Major BPS
80
0.75
1
78.6
31
Major PPT
86.6
0.82
0.7
85.4
29.4
Minor 5ss
35.7
-1.6
2.6
42.8
44.1
Minor BPS
43.1
-0.4
2
59.69
43.4

Associated Gene:

Gene:
USP15
Ensembl Gene ID:
ENSAPLG00000001801
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041372
34056794 - 34110967
54174
ENSAPLT00000029192
34061811 - 34110967
49157
ENSAPLT00000017691
34056794 - 34110967
54174
ENSAPLT00000002389
34056794 - 34110967
54174