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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_34104642_34104731_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34104642 - 34104731
Intron Length:
90

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTCTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
CCTGATTTAATC
Flanking Amino Acid:
SVLSGVAADKMIVTDIYNHR
Intron Amino Acid Position:
499

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
82.1
24.6
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
89.4
0.89
0.6
88.9
20.3
Minor 5ss
27.3
-2.6
2.7
30.6
42.8
Minor BPS
51.8
0.04
1.6
58.1
41.8

Associated Gene:

Gene:
USP15
Ensembl Gene ID:
ENSAPLG00000001801
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041372
34056794 - 34110967
54174
ENSAPLT00000029192
34061811 - 34110967
49157
ENSAPLT00000002389
34056794 - 34110967
54174