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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_34104827_34105017_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
34104827 - 34105017
Intron Length:
191

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTAAGTACA
5'SS Class:
major
3'SS Sequence:
TTTTTCTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
TTGTTTGCAATT
Flanking Amino Acid:
SSIMERDDIYVFEIAINRTE
Intron Amino Acid Position:
530

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1.1
73.6
37
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
93
0.97
0.5
93
16.2
Minor 5ss
38
-1.4
2.7
44.7
42.7
Minor BPS
47.8
-0
2.1
70.83
41.3

Associated Gene:

Gene:
USP15
Ensembl Gene ID:
ENSAPLG00000001801
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002389
34056794 - 34110967
54174
ENSAPLT00000041372
34056794 - 34110967
54174
ENSAPLT00000029192
34061811 - 34110967
49157
ENSAPLT00000017691
34056794 - 34110967
54174