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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_34109320_34109712_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
34109320 - 34109712
Intron Length:
393

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGAAAC
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTTTAACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TGTTTTTTAACA
Flanking Amino Acid:
KLDTLVDFPINDLDMSEFLI
Intron Amino Acid Position:
836

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
0.9
77.9
29.9
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
84.1
0.77
0.9
81
35.4
Minor 5ss
35.5
-1.6
3
44.2
37.3
Minor BPS
80.4
0.95
1
83.49
30.3

Associated Gene:

Gene:
USP15
Ensembl Gene ID:
ENSAPLG00000001801
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029192
34061811 - 34110967
49157
ENSAPLT00000017691
34056794 - 34110967
54174
ENSAPLT00000002389
34056794 - 34110967
54174
ENSAPLT00000041372
34056794 - 34110967
54174