Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_34109817_34110394_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

34109817 - 34110394

Intron Length:

578

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATT|GTAAGTTAT

5'SS Class:

major

3'SS Sequence:

TTTGTTGTTCTAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TAAAAAT

U12 Branch Point Sequence:

ATTCCCTAAACA

Flanking Amino Acid:

NHYGGMGGGHYTAFAKNKDD

Intron Amino Acid Position:

871

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.2

0.67

78.8

30.7

Major BPS

62.8

0.32

1.1

67.9

34.4

Major PPT

80.6

0.69

0.9

73.5

41.9

Minor 5ss

44.4

-0.6

2.9

64.1

41.5

Minor BPS

0.62

1.6

79.53

36.3

Associated Gene:

Gene:

USP15

Ensembl Gene ID:

ENSAPLG00000001801

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029192

34061811 - 34110967

49157

ENSAPLT00000017691

34056794 - 34110967

54174

ENSAPLT00000002389

34056794 - 34110967

54174

ENSAPLT00000041372

34056794 - 34110967

54174