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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_34110484_34110781_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34110484 - 34110781
Intron Length:
298

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GTG|GCAAGTACC
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATTAT
U12 Branch Point Sequence:
TTCTCTTTTACA
Flanking Amino Acid:
VSTACEDQIVSKAAYVLFYQ
Intron Amino Acid Position:
901

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.5
0.86
1
86.6
26
Major BPS
75.9
0.64
1
66.1
40.5
Major PPT
91.6
0.94
0.6
87
23.6
Minor 5ss
26.8
-2.7
3.6
35.1
34.5
Minor BPS
70.7
0.65
1.6
78.99
37.5

Associated Gene:

Gene:
USP15
Ensembl Gene ID:
ENSAPLG00000001801
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029192
34061811 - 34110967
49157
ENSAPLT00000017691
34056794 - 34110967
54174
ENSAPLT00000002389
34056794 - 34110967
54174
ENSAPLT00000041372
34056794 - 34110967
54174