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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_34128853_34142103_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34128853 - 34142103
Intron Length:
13251

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGAGC
5'SS Class:
strong_major
3'SS Sequence:
CCTTCCCCTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTTAT
U12 Branch Point Sequence:
AGCATCTAAACT
Flanking Amino Acid:
CRKKFPPVKEAAESGIIKVK
Intron Amino Acid Position:
38

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
0.9
73
38.2
Major BPS
83.6
0.84
0.8
71.9
35.8
Major PPT
79.7
0.67
0.7
72.6
25.7
Minor 5ss
27.2
-2.6
3
33.9
41.8
Minor BPS
53
0.17
1.7
67.29
43.4

Associated Gene:

Gene:
MON2
Ensembl Gene ID:
ENSAPLG00000015190
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022454
34128742 - 34218383
89642
ENSAPLT00000022005
34128742 - 34205095
76354
ENSAPLT00000015905
34128742 - 34197416
68675