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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_34142168_34145236_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
34142168 - 34145236
Intron Length:
3069

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTATT
5'SS Class:
strong_major
3'SS Sequence:
CTCTTTTCATAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAA
U12 Branch Point Sequence:
GCTTCCATATCT
Flanking Amino Acid:
IAARNTDILAALKENSSEVV
Intron Amino Acid Position:
59

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
1
90.9
28.7
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
69.5
0.44
1
76.1
31.4
Minor 5ss
47.2
-0.3
2.7
68.8
41.8
Minor BPS
58.7
0.35
1.9
77.83
44.1

Associated Gene:

Gene:
MON2
Ensembl Gene ID:
ENSAPLG00000015190
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022454
34128742 - 34218383
89642
ENSAPLT00000022005
34128742 - 34205095
76354
ENSAPLT00000015905
34128742 - 34197416
68675