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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_34151460_34152218_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34151460 - 34152218
Intron Length:
759

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
AATTTATGAAAA
Flanking Amino Acid:
LNDFPQVFLQHQEFSFLLKE
Intron Amino Acid Position:
264

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
80.7
33.7
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
97.3
1.06
0.5
96.6
11.5
Minor 5ss
33.7
-1.9
2.8
42.7
38.3
Minor BPS
49
-0
1.8
62.69
36.3

Associated Gene:

Gene:
MON2
Ensembl Gene ID:
ENSAPLG00000015190
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022005
34128742 - 34205095
76354
ENSAPLT00000015905
34128742 - 34197416
68675
ENSAPLT00000022454
34128742 - 34218383
89642