About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_34152414_34153179_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34152414 - 34153179
Intron Length:
766

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGATTA
5'SS Class:
strong_major
3'SS Sequence:
TATATCATTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTCTTTTAATC
Flanking Amino Acid:
VLIKQFYSLLVTECEIFLSL
Intron Amino Acid Position:
329

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.84
0.9
79.6
29.4
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
74.5
0.55
0.9
71.5
38.9
Minor 5ss
41.7
-0.9
3.1
53.2
45
Minor BPS
74.2
0.74
1.1
79
29.7

Associated Gene:

Gene:
MON2
Ensembl Gene ID:
ENSAPLG00000015190
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022454
34128742 - 34218383
89642
ENSAPLT00000022005
34128742 - 34205095
76354
ENSAPLT00000015905
34128742 - 34197416
68675