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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_34153305_34153646_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
34153305 - 34153646
Intron Length:
342

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATAACAT
5'SS Class:
major
3'SS Sequence:
AAATACTTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
ATTTCCAAAATA
Flanking Amino Acid:
HRLCVQPQLLRSFCQSYDMK
Intron Amino Acid Position:
370

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1
66.7
38.5
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
71.8
0.49
1
66.9
43.6
Minor 5ss
39.1
-1.2
3.2
56
48.1
Minor BPS
58.8
0.27
1.9
74.71
36.9

Associated Gene:

Gene:
MON2
Ensembl Gene ID:
ENSAPLG00000015190
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022454
34128742 - 34218383
89642
ENSAPLT00000022005
34128742 - 34205095
76354
ENSAPLT00000015905
34128742 - 34197416
68675