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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_34156459_34157656_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
34156459 - 34157656
Intron Length:
1198

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTA|GTAAGTACC
5'SS Class:
major
3'SS Sequence:
TTCAATTTTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
TATTACATGATT
Flanking Amino Acid:
VTVQGSAKATYLEMLDKVEP
Intron Amino Acid Position:
468

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1
74.3
34.1
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
79.1
0.66
0.8
77.2
36.6
Minor 5ss
38.9
-1.3
2.7
49
34.4
Minor BPS
56.7
0.29
1.8
78.28
37.6

Associated Gene:

Gene:
MON2
Ensembl Gene ID:
ENSAPLG00000015190
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022454
34128742 - 34218383
89642
ENSAPLT00000022005
34128742 - 34205095
76354
ENSAPLT00000015905
34128742 - 34197416
68675