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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_34157890_34159164_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
34157890 - 34159164
Intron Length:
1275

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTACTTGAA
5'SS Class:
major
3'SS Sequence:
CATTTCATTCAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TCTACTATAAAC
Flanking Amino Acid:
SVSDQSDKELVNRAVWEEMV
Intron Amino Acid Position:
546

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1.1
70.6
35.2
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
68.1
0.41
1.1
65.2
39.9
Minor 5ss
31
-2.2
3.3
40.5
45.6
Minor BPS
52.4
0.05
1.8
65.32
40

Associated Gene:

Gene:
MON2
Ensembl Gene ID:
ENSAPLG00000015190
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022454
34128742 - 34218383
89642
ENSAPLT00000022005
34128742 - 34205095
76354
ENSAPLT00000015905
34128742 - 34197416
68675